The Official Journal of the Turkish Society Of Clinical Microbiology and Infectious Diseases (KLİMİK)

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Original Article / VOLUME 6, ISSUE 3, SEPTEMBER 2024

The Efficacy of the Cognitive Exercise Therapy Approach by Telerehabilitation in People Living with HIV: Preliminary Results

Süreyya Damar-Örenler and others

Human immunodeficiency virus (HIV) remains a significant global health challenge with societal impacts. Despite a decline in the annual number of new cases worldwide, the incidence of HIV is on the rise in the Eastern Europe/Central Asia region, including Türkiye. With the introduction of new antiretroviral treatments (ARTs), HIV has transitioned from a […] Read More

Original Article / VOLUME 6, ISSUE 4, DECEMBER 2024

Isolation and Antibiotic Resistance Rates of Mycobacterium tuberculosis complex in Mycolor TK® System

Dilara Yıldırım and others

Tuberculosis (TB) is a common disease with high mortality and morbidity worldwide. Globally, an estimated 10.6 million people (95% uncertainty interval [UI]=9.9-11.4 million) developed TB in 2022, compared with 10.3 million in 2021 and 10.0 million in 2020. TB caused an estimated 1.30 million deaths worldwide in 2022 (95% UI=1.18-1.43 million). This was […] Read More

Original Article / VOLUME 6, ISSUE 4, DECEMBER 2024

Early Diagnosis of Candidemia in the Intensive Care Unit by Clinical and Molecular Methods: A Prospective Observational Study

Khalis Mustafayev and others

Invasive Candida infections have increased significantly in recent years due to various risk factors, including invasive procedures, vascular catheterization, intra-abdominal surgery, prolonged use of broad-spectrum antibiotics, immunosuppressive medications, hemodialysis, total parenteral nutrition (TPN), and extended intensive care unit (ICU) stays. Candida, one of the top three nosocomial bloodstream infections, [...] Read More

Original Article / VOLUME 6, ISSUE 4, DECEMBER 2024

Comparison of a Commercial SARS-CoV-2 Rapid Antigen Test with Real-Time PCR

Muhammet Çağrı Yıldız and others

Real-time reverse transcriptase polymerase chain reaction (RT-PCR) is widely used to diagnose SARS-CoV-2. However, PCR tests need expensive equipment and qualified personnel, which makes them only used in high throughput and advanced laboratory settings. Improvements in SARS-CoV-2 diagnosis with easy, rapid, and cost-effective approaches […] Read More

Original Article / VOLUME 6, ISSUE 4, DECEMBER 2024

Cystic Echinococcosis Cases: A Retrospective Evaluation in a General Surgery Department

Oruç Numan Gökçe and others

Cystic echinococcosis (CE), caused mainly by Echinococcus granulosus, is a parasitic disease common in Mediterranean countries such as Türkiye. Although it can occur anywhere in the body, it predominantly affects the liver. The disease is often asymptomatic; thus, cysts are often detected incidentally during imaging studies performed for other purposes. Read More

Original Article / VOLUME 6, ISSUE 4, DECEMBER 2024

Cytomegalovirus Infections in Patients Diagnosed with Inflammatory Bowel Disease

Melike İnan-Hekimoğlu and others

Cytomegalovirus (CMV) is a DNA virus from the Herpesviridae family that can remain latent in the body for life after primary infection and reactivate and cause viral shedding, especially in cases of immunosuppression. In studies conducted in different patient groups from Türkiye, CMV seroprevalence was reported to be between 85-100%. CMV can affect […] Read More

Original Article / VOLUME 6, ISSUE 4, DECEMBER 2024

Impact of Needle-Free Connector and Prefilled Flushing Syringe Shortage on CLABSI Rates in Pediatric Intensive Care

İlker Devrim and others

The most common and serious complication of central venous catheter usage is central line–associated bloodstream infections (CLABSIs) in children and adults. Between 2011 and 2014, CLABSIs were the most frequently reported healthcare-associated illness among hospitals in the USA. Bloodstream infections associated with central lines are […] Read More

Original Article / VOLUME 6, ISSUE 4, DECEMBER 2024

Clostridioides difficile Infections and Factors Associated with Recurrence

Sinan Çetin and Mediha Uğur

Clostridioides difficile is an anaerobic, Gram-positive, spore-forming bacteria found in the colon as part of the normal intestinal flora of a healthy individual. However, changes in the gut microbiota because of antibiotic use can lead to overgrowth of C. difficile and toxin […] Read More

Original Article / VOLUME 6, ISSUE 4, DECEMBER 2024

Predictive Role and Clinical Value of Serum Cytokines in COVID-19

Fatihan Pınarlık and others

COVID-19 is caused by SARS-CoV-2 from the Coronaviridae family, Orthocoronaviridae sub family, Betacoronavirus genus, and Sarbecovirus subfamily (1). Cytokines and chemokines have been essential in the immune response against coronaviruses (2). First reports investigating clinical features of COVID-19 showed that serum levels of interleukin (IL)-2, IL-7, IL-10, granulocyte colony-stimulating factor (GSCF), IP10 (CXCL10), [...] Read More

Original Article / VOLUME 7, ISSUE 1, MARCH 2025

Frequency and Genotype Diversity of Human Pegiviruses (HPgV) in People Infected with Human Immunodeficiency Virus (HIV)

Ebru Yücebağ-Duranay and others

Human pegiviruses (HPgV-1 and HPgV-2) are enveloped, single-stranded positive-sense RNA viruses belonging to the Pegivirus genus in the Flaviviridae family. HPgV has a genome of 8.9-11.3 kb, and the virion size is estimated at around 50-100 nm. Seven genotypes of HPgV-1 differ geographically. Two subtypes of genotype (GT) 2, which is common in Europe [...] Read More

Original Article / VOLUME 7, ISSUE 1, MARCH 2025

Analysis of Prosthetic Joint Infections, Risk Factors for Treatment Failure and Effect of Teicoplanin in Treatment: A Single-Center, Retrospective, Observational Study

Aybegüm Özşahin and others

With the prolongation of life expectancy and the developments in orthopedic surgery, noteworthy progress has been made in prosthetic joint surgery in recent years. Joint replacement provides pain relief, improves quality of life, and gives independence to individuals. Along with the advances in prosthetic surgery, prosthetic joint infection (PJI) is still the most feared complication of the procedure. Read More

Original Article / VOLUME 7, ISSUE 1, MARCH 2025

Predictors for Publication of Specialty Theses in the Field of Infectious Diseases and Clinical Microbiology

Pelin İrkören and others

The residency program of infectious diseases and clinical microbiology (IDCM) in Türkiye was started in 1983 by adopting the name IDCM. The IDCM program in Türkiye is a five-year program, including related clinical rotations. Presenting a thesis at the end of this program is mandatory. The first specialty thesis in the field of IDCM was [...] Read More

Original Article / VOLUME 7, ISSUE 1, MARCH 2025

An Analysis of Bacterial Infection Distribution in the Elderly, and Their Clinical and Laboratory Profiles: Aging and Bacterial Infection

Hanife Nur Karakoç-Parlayan and others

The demographic shift with an aging population worldwide has highlighted the unique healthcare challenges the elderly face. According to the Turkish Statistical Institute data, the population aged 65 and over reached 8,722,806 in 2023, accounting for 10.2% of the total population. Population projections indicate that the proportion of the elderly population is expected to reach 12.9% in 2030 [...] Read More

Original Article / VOLUME 7, ISSUE 1, MARCH 2025

Rapid Detection of Pathogens and Resistance Genes Grown in Blood Cultures with Two Multiplex Tandem Real-Time PCR Kits

Barış Gülhan and others

Rapid diagnosis of pathogens grown in blood cultures reduces mortality and morbidity as appropriate treatment is started early. It notably reduces hospital costs because of less need for intensive care and earlier patient discharge. Although rapid identification and antibiogram of pathogens can be made with automated blood [...] Read More

Original Article / VOLUME 7, ISSUE 1, MARCH 2025

Determination of the Viremia and Genotype Distribution of the Hepatitis C Virus and the Seroprevalence of HIV Co-Infection

Fatih Mehmet Akıllı and others

Hepatitis C virus (HCV) is an enveloped, single-stranded, positive polarity RNA virus from the Flaviviridae family. It is part of the Hepacivirus genus, wrapped in a lipid bilayer containing two viral glycoproteins (E1 and E2). HCV infection is a major public health problem that can lead to complications such as cirrhosis and liver cancer. Approximately 85% of people [...] Read More

Original Article / VOLUME 7, ISSUE 1, MARCH 2025

Healthcare-Associated Infection Rates in Türkiye (2014-2023): A Systematic Review and Meta-Analysis

Bahar Madran and others

Healthcare-associated infections (HAIs) are accepted as one of the most important challenges in hospital settings. They cause extended lengths of stay -at the hospital, threatening patient safety, increasing the rate of morbidity and mortality, raising the workforce of healthcare workers and accelerating antimicrobial resistance. According to the World Health Organization (WHO), [...] Read More